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  "Title": "General Biodiversity Indicators for Biodiversity Data Cubes",
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  "Funding": "This project receives funding from the European Union’s\nHorizon Europe Research and Innovation Programme (ID No\n101059592).",
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        "list"
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      "title": "Calculate Biodiversity Indicators Over Time",
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        "calc_ts.area_rarity",
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      "title": "Time Series of Cumulative Species Richness for Bryophytes in South Africa",
      "topics": [
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      "page": "get_bootstrap_ci",
      "title": "Calculate confidence intervals for list of 'boot' objects",
      "topics": [
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      "page": "get_observed_years",
      "title": "Extract Years With Observations from an Indicator Map",
      "topics": [
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    {
      "page": "hill0_map",
      "title": "Calculate Estimated Hill Diversity Over Space or Time",
      "topics": [
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        "hill0_ts",
        "hill1_map",
        "hill1_ts",
        "hill2_map",
        "hill2_ts"
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    {
      "page": "list_species",
      "title": "Extract Species Names.",
      "topics": [
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    {
      "page": "mgrs_to_latlong_bbox",
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      "topics": [
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      "page": "newness_map",
      "title": "Calculate Mean Year of Occurrence Over Time or Space",
      "topics": [
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    },
    {
      "page": "obs_richness_map",
      "title": "Calculate Observed Species Richness Over Space or Time",
      "topics": [
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        "obs_richness_ts"
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    },
    {
      "page": "occ_density_map",
      "title": "Calculate Occurrence Density Over Space or Time",
      "topics": [
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        "occ_density_ts"
      ]
    },
    {
      "page": "occ_turnover_ts",
      "title": "Calculate Occupancy Turnover",
      "topics": [
        "occ_turnover_ts"
      ]
    },
    {
      "page": "pielou_evenness_map",
      "title": "Calculate Evenness Over Time or Space",
      "topics": [
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        "pielou_evenness_ts",
        "williams_evenness_map",
        "williams_evenness_ts"
      ]
    },
    {
      "page": "plot_map",
      "title": "Plot Biodiversity Indicator Map",
      "topics": [
        "plot_map"
      ]
    },
    {
      "page": "plot_mv",
      "title": "Plot Interactive Biodiversity Indicator Map",
      "topics": [
        "plot_mv"
      ]
    },
    {
      "page": "plot_species_map",
      "title": "Plot Occurrence Map or Range Map of Individual Species",
      "topics": [
        "plot_species_map"
      ]
    },
    {
      "page": "plot_species_ts",
      "title": "Plot Occurrence Trends or Range Size Trends for Individual Species",
      "topics": [
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      ]
    },
    {
      "page": "plot_ts",
      "title": "Plot Biodiversity Indicator Trend",
      "topics": [
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      ]
    },
    {
      "page": "print.available_indicators",
      "title": "Print Available Indicators",
      "topics": [
        "print.available_indicators"
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    },
    {
      "page": "print.indicator_map",
      "title": "Print an Indicator Map Object",
      "topics": [
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      ]
    },
    {
      "page": "print.indicator_ts",
      "title": "Print an Indicator Time Series Object",
      "topics": [
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    },
    {
      "page": "print.processed_cube",
      "title": "Print a Processed Data Cube Object",
      "topics": [
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    },
    {
      "page": "print.processed_cube_dsinfo",
      "title": "Print a Processed Data Cube Object",
      "topics": [
        "print.processed_cube_dsinfo"
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    },
    {
      "page": "print.sim_cube",
      "title": "Print a Simulated Data Cube Object",
      "topics": [
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    },
    {
      "page": "process_cube",
      "title": "Process GBIF Data Cubes",
      "topics": [
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    },
    {
      "page": "relative_occupancy_map",
      "title": "Calculate Species Relative Occupancy Over Space or Time",
      "concept": [
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      ],
      "topics": [
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    {
      "page": "replace_na",
      "title": "Replace NA Values in Indicator Objects",
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    {
      "page": "spec_occ_map",
      "title": "Calculate Species Occurrences Over Space or Time",
      "topics": [
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    {
      "page": "spec_range_map",
      "title": "Plot Species Ranges Over Space or Time",
      "topics": [
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        "spec_range_ts"
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    },
    {
      "page": "spec_richness_density_map",
      "title": "Calculate Species Richness Density Over Space or Time",
      "topics": [
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        "spec_richness_density_ts"
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    {
      "page": "sum_by_taxon",
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      "topics": [
        "sum_by_taxon"
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      "page": "tax_distinct_map",
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    {
      "page": "total_occ_map",
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      "source": "b3gbi.Rmd",
      "filename": "b3gbi.html",
      "title": "A Gentle Introduction to b3gbi: Data Cubes to Biodiversity Indicators",
      "author": "Shawn Dove",
      "engine": "knitr::rmarkdown",
      "headings": [
        "Introduction",
        "Package Installation",
        "Step 1: Data Ingestion with process_cube()",
        "Key process_cube() Arguments",
        "Example: Import Data and Filter by Time",
        "Step 2: Indicator Calculation",
        "Available Indicators",
        "Core Arguments for Wrapper Functions",
        "Example: Observed Species Richness Map",
        "Example: Total Occurrences Time Series",
        "Step 3: Visualization with plot()",
        "Plotting the Map",
        "Plotting the Time Series"
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      "created": "2024-04-12 23:28:33",
      "modified": "2026-03-18 00:33:02",
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