{
  "_id": "6a202ed0cd65a98ecbd0d9fb",
  "Package": "impIndicator",
  "Title": "Impact Indicators of Alien Taxa",
  "Version": "0.6.1",
  "Authors@R": "c(\nperson(\"Mukhtar Muhammed\", \"Yahaya\", , \"yahayamukhtar.m@gmail.com\", role = c(\"aut\", \"cre\"),\ncomment = c(ORCID = \"0009-0008-9200-0863\", affiliation = \"Stellenbosch University (SU)\")),\nperson(\"Sabrina\", \"Kumschick\", , \"sabrina.kumschick@gmail.com\", role = c(\"aut\", \"ctb\"),\ncomment = c(ORCID = \"0000-0001-8034-5831\", affiliation = \"Stellenbosch University (SU)\")),\nperson(\"Sandra\", \"MacFadyen\", , \"sandra@biogis.co.za\", role = c(\"aut\", \"ctb\"),\ncomment = c(ORCID = \"0000-0002-5316-440X\", affiliation = \"Stellenbosch University (SU)\")),\nperson(\"Pietro\", \"Landi\", , \"landi@sun.ac.za\", role = c(\"aut\", \"ctb\"),\ncomment = c(ORCID = \"0000-0002-6373-2992\", affiliation = \"Stellenbosch University (SU)\")),\nperson(\"Cang\", \"Hui\", , \"chui@sun.ac.za\", role = c(\"aut\", \"ctb\"),\ncomment = c(ORCID = \"0000-0002-3660-8160\", affiliation = \"Stellenbosch University (SU)\")),\nperson(\"Ward\", \"Langeraert\", , \"ward.langeraert@inbo.be\", role = \"ctb\",\ncomment = c(ORCID = \"0000-0002-5900-8109\", affiliation = \"Research Institute for Nature and Forest (INBO)\")),\nperson(\"Stellenbosch University (SU)\", , , \"info@sun.ac.za\", role = \"cph\"),\nperson(\"European Union's Horizon Europe Research and Innovation Programme (ID No 101059592)\", role = \"fnd\")\n)",
  "Description": "The negative impact of alien species is recognised as a\nmajor threat to biodiversity. However, in the absence of\nevidence-based impact indicators that follow the Findable,\nAccessible, Interoperable, and Reusable (FAIR) Data Principles\nwith standardised workflows, the impacts of alien species are\nnot systematically estimated over time, a major gap for policy.\nWe develop the impIndicator R package, using an open-source\nworkflow for computing impact indicators of alien species, by\ncombining occurrence data from the Global Biodiversity\nInformation Facility (GBIF) with Environmental Impact\nClassification for Alien Taxa (EICAT) assessments.",
  "License": "MIT + file LICENSE",
  "URL": "https://github.com/b-cubed-eu/impIndicator,\nhttps://b-cubed-eu.github.io/impIndicator/",
  "BugReports": "https://github.com/b-cubed-eu/impIndicator/issues",
  "VignetteBuilder": "knitr",
  "Remotes": [
    "github::b-cubed-eu/b3gbi",
    "github::b-cubed-eu/dubicube"
  ],
  "Additional_repositories": "https://b-cubed-eu.r-universe.dev/",
  "Config/testthat/edition": "3",
  "Encoding": "UTF-8",
  "Language": "en-GB",
  "LazyData": "true",
  "Roxygen": "list(markdown = TRUE)",
  "RoxygenNote": "7.3.3",
  "Config/pak/sysreqs": "libabsl-dev cmake libgdal-dev gdal-bin libgeos-dev\nmake libicu-dev libuv1-dev libxml2-dev libssl-dev libproj-dev\nlibsqlite3-dev libudunits2-dev libx11-dev",
  "Repository": "https://b-cubed-eu.r-universe.dev",
  "Date/Publication": "2026-03-29 20:47:33 UTC",
  "RemoteUrl": "https://github.com/b-cubed-eu/impIndicator",
  "RemoteRef": "HEAD",
  "RemoteSha": "d03ace7bcd1a8b6026dfc42d9fe3673a07d36506",
  "NeedsCompilation": "no",
  "Packaged": {
    "Date": "2026-06-03 13:36:56 UTC",
    "User": "root"
  },
  "Author": "Mukhtar Muhammed Yahaya [aut, cre] (ORCID:\n<https://orcid.org/0009-0008-9200-0863>, affiliation: Stellenbosch\nUniversity (SU)),\nSabrina Kumschick [aut, ctb] (ORCID:\n<https://orcid.org/0000-0001-8034-5831>, affiliation: Stellenbosch\nUniversity (SU)),\nSandra MacFadyen [aut, ctb] (ORCID:\n<https://orcid.org/0000-0002-5316-440X>, affiliation: Stellenbosch\nUniversity (SU)),\nPietro Landi [aut, ctb] (ORCID:\n<https://orcid.org/0000-0002-6373-2992>, affiliation: Stellenbosch\nUniversity (SU)),\nCang Hui [aut, ctb] (ORCID: <https://orcid.org/0000-0002-3660-8160>,\naffiliation: Stellenbosch University (SU)),\nWard Langeraert [ctb] (ORCID: <https://orcid.org/0000-0002-5900-8109>,\naffiliation: Research Institute for Nature and Forest (INBO)),\nStellenbosch University (SU) [cph],\nEuropean Union's Horizon Europe Research and Innovation Programme (ID\nNo 101059592) [fnd]",
  "Maintainer": "Mukhtar Muhammed Yahaya <yahayamukhtar.m@gmail.com>",
  "MD5sum": "eb542830518933e336bc0533f91791aa",
  "_user": "b-cubed-eu",
  "_type": "src",
  "_file": "impIndicator_0.6.1.tar.gz",
  "_fileid": "327efd967e2e3e395a077dded0f8e759c2fe1c57d7f53bde36c600c9717fe2ee",
  "_filesize": 1643860,
  "_sha256": "327efd967e2e3e395a077dded0f8e759c2fe1c57d7f53bde36c600c9717fe2ee",
  "_created": "2026-06-03T13:36:56.000Z",
  "_published": "2026-06-03T13:40:32.796Z",
  "_distro": "noble",
  "_jobs": [
    {
      "job": 79307244462,
      "time": 176,
      "config": "linux-devel-x86_64",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "7386220068"
    },
    {
      "job": 79307244471,
      "time": 173,
      "config": "linux-release-x86_64",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7386219265"
    },
    {
      "job": 79307244413,
      "time": 134,
      "config": "macos-oldrel-arm64",
      "r": "4.5.3",
      "check": "OK",
      "artifact": "7386205044"
    },
    {
      "job": 79307244476,
      "time": 146,
      "config": "macos-release-arm64",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7386221112"
    },
    {
      "job": 79306481368,
      "time": 216,
      "config": "source",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7386144159"
    },
    {
      "job": 79307244423,
      "time": 169,
      "config": "wasm-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7386216831"
    },
    {
      "job": 79307244361,
      "time": 156,
      "config": "windows-devel",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "7386211400"
    },
    {
      "job": 79307244412,
      "time": 104,
      "config": "windows-oldrel",
      "r": "4.5.3",
      "check": "OK",
      "artifact": "7386189162"
    },
    {
      "job": 79307244414,
      "time": 108,
      "config": "windows-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7386190930"
    }
  ],
  "_buildurl": "https://github.com/r-universe/b-cubed-eu/actions/runs/26888204352",
  "_status": "success",
  "_host": "GitHub-Actions",
  "_upstream": "https://github.com/b-cubed-eu/impIndicator",
  "_commit": {
    "id": "d03ace7bcd1a8b6026dfc42d9fe3673a07d36506",
    "author": "Mukhtar Muhammed Yahaya <126781903+mmyahaya@users.noreply.github.com>",
    "committer": "GitHub <noreply@github.com>",
    "message": "Merge pull request #81 from b-cubed-eu/stop_dividing_by_site_no\n\n-   Improve the indicator names for clarity and consistency\n\n-   The name *overall* impact indicator has been changed to *regional* impact indicator\n\n-   The species and regional impact indicators are no longer divided by the total number of sites occupied in the analysis\n\n-   Fix the bug in the exponential transformation of impact categories to impact scores",
    "time": 1774817253
  },
  "_maintainer": {
    "name": "Mukhtar Muhammed Yahaya",
    "email": "yahayamukhtar.m@gmail.com",
    "login": "mmyahaya",
    "description": "",
    "uuid": 126781903
  },
  "_registered": true,
  "_dependencies": [
    {
      "package": "R",
      "version": ">= 3.5",
      "role": "Depends"
    },
    {
      "package": "assertthat",
      "role": "Imports"
    },
    {
      "package": "b3gbi",
      "version": ">= 0.2.2",
      "role": "Imports"
    },
    {
      "package": "cli",
      "role": "Imports"
    },
    {
      "package": "dplyr",
      "role": "Imports"
    },
    {
      "package": "dubicube",
      "version": ">= 0.11.0",
      "role": "Imports"
    },
    {
      "package": "ggplot2",
      "role": "Imports"
    },
    {
      "package": "magrittr",
      "role": "Imports"
    },
    {
      "package": "rgbif",
      "role": "Imports"
    },
    {
      "package": "rlang",
      "role": "Imports"
    },
    {
      "package": "rnaturalearth",
      "role": "Imports"
    },
    {
      "package": "scales",
      "role": "Imports"
    },
    {
      "package": "sf",
      "role": "Imports"
    },
    {
      "package": "stats",
      "role": "Imports"
    },
    {
      "package": "tibble",
      "role": "Imports"
    },
    {
      "package": "tidyr",
      "role": "Imports"
    },
    {
      "package": "utils",
      "role": "Imports"
    },
    {
      "package": "knitr",
      "role": "Suggests"
    },
    {
      "package": "rmarkdown",
      "role": "Suggests"
    },
    {
      "package": "rnaturalearthdata",
      "role": "Suggests"
    },
    {
      "package": "testthat",
      "version": ">= 3.0.0",
      "role": "Suggests"
    }
  ],
  "_owner": "b-cubed-eu",
  "_selfowned": true,
  "_usedby": 0,
  "_updates": [
    {
      "week": "2025-28",
      "n": 1
    },
    {
      "week": "2025-43",
      "n": 2
    },
    {
      "week": "2025-51",
      "n": 2
    },
    {
      "week": "2026-02",
      "n": 1
    },
    {
      "week": "2026-08",
      "n": 2
    },
    {
      "week": "2026-13",
      "n": 2
    }
  ],
  "_tags": [
    {
      "name": "v.0.3.0",
      "date": "2025-10-20"
    },
    {
      "name": "v0.3.1",
      "date": "2025-10-22"
    },
    {
      "name": "v0.3.2",
      "date": "2025-12-15"
    },
    {
      "name": "v0.4.0",
      "date": "2025-12-18"
    },
    {
      "name": "v0.5.0",
      "date": "2026-01-05"
    },
    {
      "name": "v0.6.0",
      "date": "2026-02-19"
    },
    {
      "name": "v0.6.1",
      "date": "2026-03-29"
    }
  ],
  "_topics": [
    "biodiversity-indicators",
    "impact",
    "invasive-species"
  ],
  "_stars": 0,
  "_contributors": [
    {
      "user": "mmyahaya",
      "count": 215,
      "uuid": 126781903
    },
    {
      "user": "wlangera",
      "count": 38,
      "uuid": 60934857
    },
    {
      "user": "peterdesmet",
      "count": 9,
      "uuid": 600993
    },
    {
      "user": "skumschick",
      "count": 1,
      "uuid": 128040002
    }
  ],
  "_userbio": {
    "uuid": 114525527,
    "type": "organization",
    "name": "B-Cubed",
    "description": "Biodiversity Building Blocks for Policy"
  },
  "_downloads": {
    "count": 0,
    "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/impIndicator"
  },
  "_devurl": "https://github.com/b-cubed-eu/impindicator",
  "_pkgdown": "https://b-cubed-eu.github.io/impIndicator/",
  "_searchresults": 5,
  "_rbuild": "4.6.0",
  "_assets": [
    "extra/citation.cff",
    "extra/citation.html",
    "extra/citation.json",
    "extra/citation.txt",
    "extra/contents.json",
    "extra/impIndicator.html",
    "extra/NEWS.html",
    "extra/NEWS.txt",
    "extra/readme.html",
    "extra/readme.md",
    "manual.pdf"
  ],
  "_cranurl": false,
  "_exports": [
    "compute_regional_indicator",
    "compute_site_indicator",
    "compute_species_indicator",
    "create_impact_cube_data",
    "impact_cat",
    "prepare_indicators_bootstrap",
    "taxa_cube"
  ],
  "_datasets": [
    {
      "name": "cube_acacia_SA",
      "title": "GBIF Occurrence Cube of acacia in South Africa An example of occurrence cube of GBIF containing required column for impact indicator.",
      "object": "cube_acacia_SA",
      "class": [
        "data.frame"
      ],
      "fields": [
        "year",
        "eqdcellcode",
        "specieskey",
        "species",
        "occurrences",
        "kingdom",
        "family",
        "mincoordinateuncertaintyinmeters"
      ],
      "rows": 4700,
      "table": true,
      "tojson": true
    },
    {
      "name": "eicat_acacia",
      "title": "EICAT data of acacia taxa An example of EICAT data containing species name, impact category and mechanism.",
      "object": "eicat_acacia",
      "class": [
        "tbl_df",
        "tbl",
        "data.frame"
      ],
      "fields": [
        "scientific_name",
        "impact_category",
        "impact_mechanism"
      ],
      "rows": 138,
      "table": true,
      "tojson": true
    },
    {
      "name": "southAfrica_sf",
      "title": "South African sf An example of region sf for impact indicator.",
      "object": "southAfrica_sf",
      "class": [
        "sf",
        "data.frame"
      ],
      "fields": [
        "geometry"
      ],
      "rows": 1,
      "table": false,
      "tojson": true
    },
    {
      "name": "taxa_Acacia",
      "title": "GBIF occurrences data of acacia in South Africa An example of occurrence data from GBIF containing required column for impact indicator.",
      "object": "taxa_Acacia",
      "class": [
        "tbl_df",
        "tbl",
        "data.frame"
      ],
      "fields": [
        "decimalLatitude",
        "decimalLongitude",
        "species",
        "speciesKey",
        "coordinateUncertaintyInMeters",
        "year"
      ],
      "rows": 19100,
      "table": true,
      "tojson": true
    }
  ],
  "_help": [
    {
      "page": "compute_regional_indicator",
      "title": "Overall impact indicator",
      "concept": [
        "Indicator function"
      ],
      "topics": [
        "compute_regional_indicator"
      ]
    },
    {
      "page": "compute_site_indicator",
      "title": "Site impact indicator",
      "concept": [
        "Indicator function"
      ],
      "topics": [
        "compute_site_indicator"
      ]
    },
    {
      "page": "compute_species_indicator",
      "title": "Compute species impact indicator",
      "concept": [
        "Indicator function"
      ],
      "topics": [
        "compute_species_indicator"
      ]
    },
    {
      "page": "create_impact_cube_data",
      "title": "Create impact cube data",
      "topics": [
        "create_impact_cube_data"
      ]
    },
    {
      "page": "cube_acacia_SA",
      "title": "GBIF Occurrence Cube of acacia in South Africa An example of occurrence cube of GBIF containing required column for impact indicator.",
      "concept": [
        "Data"
      ],
      "topics": [
        "cube_acacia_SA"
      ]
    },
    {
      "page": "eicat_acacia",
      "title": "EICAT data of acacia taxa An example of EICAT data containing species name, impact category and mechanism.",
      "concept": [
        "Data"
      ],
      "topics": [
        "eicat_acacia"
      ]
    },
    {
      "page": "impact_cat",
      "title": "Impact categories",
      "concept": [
        "Prepare data"
      ],
      "topics": [
        "impact_cat"
      ]
    },
    {
      "page": "plot.impact_indicator",
      "title": "Plot overall impact indicator",
      "concept": [
        "Plot"
      ],
      "topics": [
        "plot.impact_indicator"
      ]
    },
    {
      "page": "plot.site_impact",
      "title": "Plot site impact",
      "concept": [
        "Plot"
      ],
      "topics": [
        "plot.site_impact"
      ]
    },
    {
      "page": "plot.species_impact",
      "title": "Plot species impact",
      "concept": [
        "Plot"
      ],
      "topics": [
        "plot.species_impact"
      ]
    },
    {
      "page": "prepare_indicators_bootstrap",
      "title": "Prepare indicators for bootstrap and cross validation",
      "topics": [
        "prepare_indicators_bootstrap"
      ]
    },
    {
      "page": "print.impact_indicator",
      "title": "Print an impact_indicator object",
      "topics": [
        "print.impact_indicator"
      ]
    },
    {
      "page": "print.site_impact",
      "title": "Print an site_impact object",
      "topics": [
        "print.site_impact"
      ]
    },
    {
      "page": "print.species_impact",
      "title": "Print an species_impact object",
      "topics": [
        "print.species_impact"
      ]
    },
    {
      "page": "southAfrica_sf",
      "title": "South African sf An example of region sf for impact indicator.",
      "concept": [
        "Data"
      ],
      "topics": [
        "southAfrica_sf"
      ]
    },
    {
      "page": "taxa_Acacia",
      "title": "GBIF occurrences data of acacia in South Africa An example of occurrence data from GBIF containing required column for impact indicator.",
      "concept": [
        "Data"
      ],
      "topics": [
        "taxa_Acacia"
      ]
    },
    {
      "page": "taxa_cube",
      "title": "Build occurrences cube",
      "concept": [
        "Prepare data"
      ],
      "topics": [
        "taxa_cube"
      ]
    }
  ],
  "_pkglogo": "https://github.com/b-cubed-eu/impIndicator/raw/HEAD/man/figures/logo.png",
  "_readme": "https://github.com/b-cubed-eu/impIndicator/raw/HEAD/README.md",
  "_rundeps": [
    "askpass",
    "assertthat",
    "b3gbi",
    "backports",
    "bit",
    "bit64",
    "boot",
    "broom",
    "class",
    "classInt",
    "cli",
    "clipr",
    "cpp11",
    "crayon",
    "crul",
    "curl",
    "data.table",
    "DBI",
    "dplyr",
    "dubicube",
    "e1071",
    "effectclass",
    "farver",
    "generics",
    "ggplot2",
    "glue",
    "gtable",
    "hms",
    "httpcode",
    "httr",
    "iNEXT",
    "isoband",
    "jsonlite",
    "KernSmooth",
    "labeling",
    "lazyeval",
    "lifecycle",
    "magrittr",
    "MASS",
    "mgrs",
    "mime",
    "modelr",
    "oai",
    "openssl",
    "patchwork",
    "permute",
    "pillar",
    "pkgconfig",
    "plyr",
    "prettyunits",
    "progress",
    "proxy",
    "purrr",
    "R6",
    "RColorBrewer",
    "Rcpp",
    "readr",
    "reshape2",
    "rgbif",
    "rlang",
    "rnaturalearth",
    "s2",
    "S7",
    "scales",
    "sf",
    "stringi",
    "stringr",
    "sys",
    "terra",
    "tibble",
    "tidyr",
    "tidyselect",
    "triebeard",
    "tzdb",
    "units",
    "urltools",
    "utf8",
    "vctrs",
    "viridisLite",
    "vroom",
    "whisker",
    "withr",
    "wk",
    "xml2"
  ],
  "_vignettes": [
    {
      "source": "background.Rmd",
      "filename": "background.html",
      "title": "Background",
      "engine": "knitr::rmarkdown",
      "headings": [
        "Introduction",
        "Method",
        "Ocurrences data",
        "Impact data",
        "Transforming EICAT impact categories to numerical values",
        "Species impact indicator",
        "Site impact indicator",
        "Regional impact indicator"
      ],
      "created": "2025-07-10 10:06:36",
      "modified": "2026-03-29 20:47:33",
      "commits": 2
    }
  ],
  "_score": 3.954242509439325,
  "_indexed": true,
  "_nocasepkg": "impindicator",
  "_universes": [
    "b-cubed-eu",
    "mmyahaya"
  ],
  "_binaries": [
    {
      "r": "4.7.0",
      "os": "linux",
      "version": "0.6.1",
      "date": "2026-06-03T13:39:31.000Z",
      "distro": "noble",
      "commit": "d03ace7bcd1a8b6026dfc42d9fe3673a07d36506",
      "fileid": "79711bb761c671a1a85c8a8bd09e179bf922f35e2d1d274015417c26a6564e70",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/b-cubed-eu/actions/runs/26888204352"
    },
    {
      "r": "4.6.0",
      "os": "linux",
      "version": "0.6.1",
      "date": "2026-06-03T13:39:32.000Z",
      "distro": "noble",
      "commit": "d03ace7bcd1a8b6026dfc42d9fe3673a07d36506",
      "fileid": "026a197119e66f1f8cf9d1866ea7a70904da1749fef6555aef3aec0e204af23f",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/b-cubed-eu/actions/runs/26888204352"
    },
    {
      "r": "4.5.3",
      "os": "mac",
      "version": "0.6.1",
      "date": "2026-06-03T13:38:56.000Z",
      "commit": "d03ace7bcd1a8b6026dfc42d9fe3673a07d36506",
      "fileid": "e6a9728bc16c32888c258ade12864ed422394d32d14c7b1761b1d17f18bbfb5e",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/b-cubed-eu/actions/runs/26888204352"
    },
    {
      "r": "4.6.0",
      "os": "mac",
      "version": "0.6.1",
      "date": "2026-06-03T13:39:39.000Z",
      "commit": "d03ace7bcd1a8b6026dfc42d9fe3673a07d36506",
      "fileid": "79a0964d5afef4145fff50e2690df2e5017c7c224cfdea22b5a107bf43792ff1",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/b-cubed-eu/actions/runs/26888204352"
    },
    {
      "r": "4.6.0",
      "os": "wasm",
      "version": "0.6.1",
      "date": "2026-06-03T13:40:00.000Z",
      "commit": "d03ace7bcd1a8b6026dfc42d9fe3673a07d36506",
      "fileid": "60e9d55cc8ec84082575155bd960b864c373c202de3a136d7a45bb4d552f7436",
      "status": "success",
      "buildurl": "https://github.com/r-universe/b-cubed-eu/actions/runs/26888204352"
    },
    {
      "r": "4.7.0",
      "os": "win",
      "version": "0.6.1",
      "date": "2026-06-03T13:38:52.000Z",
      "commit": "d03ace7bcd1a8b6026dfc42d9fe3673a07d36506",
      "fileid": "83f0010ccfae5b874db0d5aae37caecffeffe0a29ae8cba8839c74d99d3774a4",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/b-cubed-eu/actions/runs/26888204352"
    },
    {
      "r": "4.5.3",
      "os": "win",
      "version": "0.6.1",
      "date": "2026-06-03T13:38:10.000Z",
      "commit": "d03ace7bcd1a8b6026dfc42d9fe3673a07d36506",
      "fileid": "8e555e0bd3fb674e8449569c6477c6b14e0be2af4e0602ad1aa0334ecc32249c",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/b-cubed-eu/actions/runs/26888204352"
    },
    {
      "r": "4.6.0",
      "os": "win",
      "version": "0.6.1",
      "date": "2026-06-03T13:38:16.000Z",
      "commit": "d03ace7bcd1a8b6026dfc42d9fe3673a07d36506",
      "fileid": "4816cede40269c9ea5bc11b58475c2d6614373364b177caf2ed80192483275f3",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/b-cubed-eu/actions/runs/26888204352"
    }
  ]
}