Type: Package
Package: b3gbi
Title: General Biodiversity Indicators for Biodiversity Data Cubes
Version: 1.1.3.9000
Authors@R: c(
    person("Shawn", "Dove", email = "Shawn.Dove@allzool.bio.uni-giessen.de",
           role = c("aut", "cre"), comment = c(ORCID = "0000-0001-9465-5638")),
    person("Ward", "Langeraert", role = "ctb", comment = c(ORCID = "0000-0002-5900-8109")),
    person("Peter", "Desmet", role = "ctb", comment = c(ORCID = "0000-0002-8442-8025")),
    person("University of Giessen", role = "cph"),
    person("European Union", role = "fnd",
           comment = "Horizon Europe Research and Innovation Programme, grant 101059592")
  )
Description: Calculate general biodiversity indicators from species
        occurrence cubes, such as those produced by the 'GBIF' (Global
        Biodiversity Information Facility) occurrence cube service
        <https://techdocs.gbif.org/en/data-use/data-cubes>. Indicators
        include observed and coverage-based rarefied species richness
        and Hill numbers (via 'iNEXT'), evenness, rarity, taxonomic
        distinctness, occupancy, turnover and sample completeness, and
        can be calculated over time (time series) or space (maps), with
        bootstrap confidence intervals. Cubes using the EEA reference
        grid, MGRS, the extended quarter-degree grid (EQDGC) or ISEA3H
        grids are supported. For details see Dove (2026)
        <doi:10.21105/joss.10963>.
License: MIT + file LICENSE
URL: https://github.com/b-cubed-eu/b3gbi,
        https://b-cubed-eu.github.io/b3gbi/
Depends: R (>= 3.5.0)
Imports: boot, dplyr, ggplot2, iNEXT, magrittr, purrr, readr, rlang,
        rnaturalearth, scales, sf, stringr, tibble, tidyr, tidyselect,
        units
Suggests: bit64, dggridR, dubicube, knitr, mapview, mockery, mockr,
        patchwork, RColorBrewer, rgbif (>= 3.7.0), rmarkdown,
        rnaturalearthdata, rnaturalearthhires, testthat (>= 3.0.0),
        withr
Config/testthat/edition: 3
Config/Needs/check: b-cubed-eu/dubicube, ropensci/rnaturalearthhires
Config/Needs/coverage: b-cubed-eu/dubicube, ropensci/rnaturalearthhires
Config/Needs/website: b-cubed-eu/dubicube, ropensci/rnaturalearthhires
Encoding: UTF-8
LazyData: true
Roxygen: list(markdown = TRUE)
RoxygenNote: 7.3.3
VignetteBuilder: knitr, rmarkdown
Additional_repositories: https://b-cubed-eu.r-universe.dev,
        https://ropensci.r-universe.dev
BugReports: https://github.com/b-cubed-eu/b3gbi/issues
Config/pak/sysreqs: libabsl-dev cmake libgdal-dev gdal-bin libgeos-dev
        libicu-dev libssl-dev libproj-dev libsqlite3-dev
        libudunits2-dev libx11-dev
Repository: https://b-cubed-eu.r-universe.dev
Date/Publication: 2026-10-22 07:19:35 UTC
RemoteUrl: https://github.com/b-cubed-eu/b3gbi
RemoteRef: HEAD
RemoteSha: 1452bd7455eb4e2acf7c93ab52f94535e3219409
NeedsCompilation: no
Packaged: 2026-10-22 10:51:05 UTC; root
Author: Shawn Dove [aut, cre] (ORCID: <https://orcid.org/0000-0001-9465-5638>),
  Ward Langeraert [ctb] (ORCID: <https://orcid.org/0000-0002-5900-8109>),
  Peter Desmet [ctb] (ORCID: <https://orcid.org/0000-0002-8442-8025>),
  University of Giessen [cph],
  European Union [fnd] (Horizon Europe Research and Innovation Programme,
    grant 101059592)
Maintainer: Shawn Dove <Shawn.Dove@allzool.bio.uni-giessen.de>