Package: pdindicatoR
Title: Calculate and visualize a phylogenetic diversity indicators
        based on species occurrence data cubes
Version: 0.1.0
Authors@R: c(
    person("Lissa", "Breugelmans", , "lissa.breugelmans@plantentuinmeise.be", role = c("aut", "cre"),
           comment = c(ORCID = "0000-0002-8472-3577", affiliation = "Meise Botanic Garden")),
    person("Maarten", "Trekels", , "maarten.trekels@plantentuinmeise.be", role = "aut",
           comment = c(ORCID = "0000-0001-8282-8765", affiliation = "Meise Botanic Garden")),
    person("Louise", "Hendrickx", , "louise.hendrickx@plantentuinmeise.be", role = "aut",
           comment = c(ORCID = "0000-0002-9317-7862", affiliation = "Meise Botanic Garden")),
    person("Ward", "Langeraert", , "ward.langeraert@inbo.be", role = "ctb",
           comment = c(ORCID = "0000-0002-5900-8109", affiliation = "Research Institute for Nature and Forest (INBO)")),
    person("Meise Botanic Garden", , , "b-cubedsupport@meisebotanicgarden.be", role = "cph"),
    person("European Union's Horizon Europe Research and Innovation Programme (ID No 101059592)", role = "fnd")
  )
Description: A package to calculate and produce a map of phylogenetic
        diversity scores for each grid cell in the input species
        occurrences data cube, and calculate the percentage of high PD
        cells within currently protected areas.  You provide a
        phylogenetic tree, the datacube for the corresponding species
        is downloaded from GBIF (or user-uploaded), and the package
        does the rest.
License: MIT + file LICENSE
URL: https://github.com/b-cubed-eu/pdindicatoR,
        https://b-cubed-eu.github.io/pdindicatoR/,
        https://doi.org/10.5281/zenodo.14237551
BugReports: https://github.com/b-cubed-eu/pdindicatoR/issues
Imports: ape, assertthat, dplyr, gdalUtilities, ggplot2, rlang,
        rnaturalearth, rnaturalearthdata, rotl, sf, shiny, stringr
Suggests: purrr, testthat (>= 3.0.0)
Config/checklist/communities: b3
Config/checklist/keywords: phylogenetic diversity; data cubes; B-Cubed;
        biodiversity
Config/testthat/edition: 3
Encoding: UTF-8
Language: en-GB
Roxygen: list(markdown = TRUE)
RoxygenNote: 7.3.2
Config/pak/sysreqs: libabsl-dev cmake libgdal-dev gdal-bin libgeos-dev
        make libicu-dev libuv1-dev libxml2-dev libssl-dev libproj-dev
        libsqlite3-dev libudunits2-dev zlib1g-dev
Repository: https://b-cubed-eu.r-universe.dev
Date/Publication: 2026-03-23 10:24:51 UTC
RemoteUrl: https://github.com/b-cubed-eu/pdindicatoR
RemoteRef: HEAD
RemoteSha: 5bbd91d03800357d5c0bff8092d8204c42e82fda
NeedsCompilation: no
Packaged: 2026-06-21 10:38:48 UTC; root
Author: Lissa Breugelmans [aut, cre] (ORCID:
    <https://orcid.org/0000-0002-8472-3577>, affiliation: Meise Botanic
    Garden),
  Maarten Trekels [aut] (ORCID: <https://orcid.org/0000-0001-8282-8765>,
    affiliation: Meise Botanic Garden),
  Louise Hendrickx [aut] (ORCID: <https://orcid.org/0000-0002-9317-7862>,
    affiliation: Meise Botanic Garden),
  Ward Langeraert [ctb] (ORCID: <https://orcid.org/0000-0002-5900-8109>,
    affiliation: Research Institute for Nature and Forest (INBO)),
  Meise Botanic Garden [cph],
  European Union's Horizon Europe Research and Innovation Programme (ID
    No 101059592) [fnd]
Maintainer: Lissa Breugelmans <lissa.breugelmans@plantentuinmeise.be>