Package: impIndicator 0.0.1

Mukhtar Muhammed Yahaya

impIndicator: Impact Indicators of Alien Taxa

Compute impact indicators of alien taxa using GBIF occurrence cube and EICAT assessment of alien species. Aggregates species impact of various scores due to mecahnism. Aggregates site impact of various scores due to species.

Authors:Mukhtar Muhammed Yahaya [aut, cre], Sabrina Kumschick [aut, ctb], Sandra MacFadyen [aut, ctb], Pietro Landi [aut, ctb], Cang Hui [aut, ctb], Stellenbosch University [cph]

impIndicator_0.0.1.tar.gz
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impIndicator.pdf |impIndicator.html✨
impIndicator/json (API)

# Install 'impIndicator' in R:

install.packages('impIndicator', repos = c('https://b-cubed-eu.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/b-cubed-eu/impindicator/issues

Pkgdown site:https://b-cubed-eu.github.io

Datasets:

eicat_acacia - EICAT data of acacia taxa An example of EICAT data containing species name, impact category and mechanism.
southAfrica_sf - South African sf An example of region sf for impact indicator.
taxa_Acacia - GBIF occurrences data of acacia in South Africa An example of occurrence data from GBIF containing required column for impact indicator.

On CRAN:

biodiversity-indicators impact invasive-species

4.34 score 4 scripts 6 exports 92 dependencies

Last updated 2 days agofrom:5d0fd3c569. Checks:8 OK. Indexed: yes.

Target	Result	Latest binary
Doc / Vignettes	OK	Feb 20 2025
R-4.5-win	OK	Feb 20 2025
R-4.5-mac	OK	Feb 20 2025
R-4.5-linux	OK	Feb 20 2025
R-4.4-win	OK	Feb 20 2025
R-4.4-mac	OK	Feb 20 2025
R-4.3-win	OK	Feb 20 2025
R-4.3-mac	OK	Feb 20 2025

Exports:%>%impact_cat impact_indicator site_impact species_impact taxa_cube

Dependencies:askpass assertthat b3gbi bit bit64 boot class classInt cli clipr codetools colorspace cpp11 crayon crul curl data.table DBI digest dplyr e1071 fansi farver furrr future generics ggplot2 globals glue gtable hms httpcode httr iNEXT isoband jsonlite KernSmooth labeling lattice lazyeval lifecycle listenv magrittr MASS Matrix mgcv mgrs mime munsell nlme oai openssl parallelly patchwork permute pillar pkgconfig plyr prettyunits progress proxy purrr R6 RColorBrewer Rcpp readr reshape2 rgbif rlang rnaturalearth s2 scales sf stringi stringr sys terra tibble tidyr tidyselect triebeard tzdb units urltools utf8 vctrs viridisLite vroom whisker withr wk xml2

Background

Rendered fromBackground.Rmdusingknitr::rmarkdownon Feb 20 2025.

Last update: 2025-02-12
Started: 2024-12-28

Prepare data

Rendered fromPrepare_data.Rmdusingknitr::rmarkdownon Feb 20 2025.

Last update: 2025-01-29
Started: 2024-12-22

Citation

Development and contributors

Readme and manuals

Help Manual

Help page	Topics
EICAT data of acacia taxa An example of EICAT data containing species name, impact category and mechanism.	eicat_acacia
Compute impact categories	impact_cat
Impact indicator	impact_indicator
Plot impact indicator	plot.impact_indicator
Plot site impact	plot.site_impact
Plot species impact	plot.species_impact
Compute site impact indicator	site_impact
South African sf An example of region sf for impact indicator.	southAfrica_sf
Compute species impact indicator	species_impact
GBIF occurrences data of acacia in South Africa An example of occurrence data from GBIF containing required column for impact indicator.	taxa_Acacia
Prepare Data Cubes	taxa_cube